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Query Language Documentation
Query Language Documentation

Query Commands

Kieran McKeag avatar
Written by Kieran McKeag
Updated over a week ago

Query Commands

Single-Result Source Queries:

  • describe: allows user to see the distribution of their data columns

  • relate: allows user to associate connections between and amongst data

Paired Source Queries

  • diff: shows the difference between baseline and test results

  • absdiff: returns absolute values of diff

    [GUI representation?]

  • corr: returns correlation between two sets of values

    [leaving out for now due to a bug in plotting]

  • stat:

    • precision: ratio between baseline positives and test positives

    • recall: ratio of test correctly identifying true positives from baseline

    • f1: harmonic mean between precision and recall

    • concordance: percent of matching entries from baseline to test

  • compare: compares stats of columns against one another on x and y axes

Query Modifiers

  • Filter clauses: find under Advanced for various widgets by typing a results filter

    • where: filter sorting what amount of criteria is met when a condition is set

      • e.g. concordance where pos > 0

    • rwhere: works like where but only applies to test dataset

  • Groupby: groups matching results together

  • Gatediff: considers results a match only if field X is less than a value Y

    • e.g. if all columns match, but gatediff criteria is VF<0.1 and two results have a difference of VF of 0.2, concordance between the two results is 0

  • Limiting: limit the returned results from the query

    • e.g. groupby chr:0,5 ← groups by chromosome, returning only the 5 top results

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